Kundu S and Roy
Structural Analysis of Ca++ Dependent
and Ca++ Independent Type II Antifreeze Proteins: A Comparative
Molecular Dynamics Simulation Study. J Mol
Graph Model. (In Press).
Bandyopadhyay B, Das Gupta T, Roy
D, Das Gupta SK. (2012)
DnaK Dependence of the Mycobacterial
Stress-Responsive Regulator HspR is Mediated through its
Hydrophobic C-Terminal Tail. J
Kundu S and Roy D.
(2010) Structural study of carboxylesterase from
hyperthermophilic bacteria Geobacillus stearothermophilus by
molecular dynamics simulation. J Mol Graph Model. 28:820-827.
Banerjee R and Roy D. .(2009)
Codon usage and gene expression pattern of Stenotrophomonas
maltophilia R551-3 for pathogenic mode of living. Biochem
Biophys Res Commun 390:177-181.
Kundu S and
Roy D. (2009)
Comparative structural studies of
psychrophilic and mesophilic protein homologues by molecular
dynamics simulation. J Mol
Graph Model. 27:871-880.
Kundu S and
Roy D. (2008) Temperature-induced unfolding pathway of a
type III antifreeze protein: Insight from molecular dynamics
simulation. J Mol Graph Model. 27:88-94.
Kundu S and
Roy D. (2007) Structural considerations for designing
adenosine analogs as selective inhibitors of Trichomonas sp.
glyceraldehyde-3- phosphate dehydrogenase. In Silico Biol.
Kundu S and Roy D.
(2007) Computational study of glyceraldehyde-3-phosphate
dehydrogenase of Entamoeba histolytica: Implications for
structure based drug design. J Biomol Struct Dyn. 25:
25-33. (Cover illustration).
Roy D, Bhattacharya B, Basu G. (2007) Differential
colchicine-binding across eukaryotic families: the role of
highly conserved Pro268beta and Ala248beta residues in animal
tubulin. FEBS Lett. 581:
and Sengupta S. (2007) Structural Features of a cold-adapted
Alaskan bacterial Lipase. J Biomol Struct Dyn 24: 463-470.
S, Sinha NK, Banerjee S, Roy D, Chattopadhyay D, Roy S.
(2006) Small cationic protein
from a marine turtle has beta-defensin-like fold and
antibacterial and antiviral activity. Proteins 64:
K, Maitra S, Goswami L, Roy D, Das KP, Majumder AL.
(2006) An insight into the molecular basis of salt tolerance of
L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.)
Tateoka, a halophytic wild rice. Plant Physiol. 140: 1279-1296.
Banerjee M, Poddar A, Banerjee A, Basu G, Roy D and
Bhattacharya B. (2005) The biphasic kinetics of
Colchicine-Tubulin interaction: Role of amino acids surrounding
the A-ring of bound colchicine molecule. Biochemistry 44:
and Lohia A. (2004) Sequence divergence of Entamoeba
histolytica tubulin is responsible for its altered tertiary
structure. Biochem Biophys Res Commun 319:1010-1016.
Hess D, Majumder P, Roy D, Das S. (2004) The interactions
of allium sativum leaf agglutinin with a chaperonin group of
unique receptor protein isolated from a bacterial endosymbiont
of the mustard aphid. J Biol Chem. 279: 23782-23789.
Ghosh D, Gupta-Bhattacharya S. (2003) Homology modeling of
allergenic cyclophilins: IgE-binding site and structural basis
of cross-reactivity. Biochem Biophys Res Commun. 307:422-429.
Mukhopadhyay C. (2002) Molecular dynamics simulation of GM1 in
phospholipid bilayer. J Biomol Struct Dyn. 19: 1121-1132.
Ghose M, Mandal
S, Roy D, Mandal R K, Basu G. (2001) Dielectric
relaxation in a single tryptophan protein. FEBS Lett. 509:
Mukhopadhyay C. (2001) GD1a in phospholipid bilayer: A molecular
dynamics simulation. J Biomol Struct Dyn. 18: 639-646.
Hingerty B E, Shapiro R and Broyde S. (1998) Stabilization of
Slipped Mutagenic Intermediates in the NarI mutational hotspot
sequence: AF and AAF modified guanines in the syn conformation
stabilize the slipped form. Chem Res Toxicol 11: 1301-1311.
Hingerty B E, Shapiro R and Broyde S. (1997) Modeling DNA
Replication Intermediates. Structure, Motion, Interaction and
Expression of Biological Macromolecules. Proceedings of the
tenth conversation. State University of New York, Albany, NY
Lo P.C. H.
Roy D, Mount S M. (1994) Supressor U1snRNAs In Drosophila.
Genetics 138: 1-14.
Weinberg J M, Roy D and Mount S M. (1993) P
Element-mediated in Vivo Deletion analysis of
white-apricot: Deletions between direct repeats are strongly
favored. Genetics 136: 1001-1011.